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Publications/Citing CTD

Contents

  1. Citing CTD
  2. Publications
  3. Presentations, Posters, Etc.

Top Citing CTD

Please use this citation for CTD in your publications and presentations:

Davis AP, King BL, Mockus S, Murphy CG, Saraceni-Richards C, Rosenstein M, Wiegers T, Mattingly CJ. The Comparative Toxicogenomics Database: update 2011. Nucleic Acids Res. 2011 Jan;39(Database issue):D1067-72.

To cite specific data, use this citation:

Curated [chemical–gene interactions|chemical–disease|gene–disease] data were retrieved from the Comparative Toxicogenomics Database (CTD), Mount Desert Island Biological Laboratory, Salisbury Cove, Maine. World Wide Web (URL: http://ctdbase.org/). [Month, year (when you retrieved the data)].

See also: CTD logos.

Top Publications

  1. Hirschman L, Burns GA, Krallinger M, Arighi C, Cohen KB, Valencia A, Wu CH, Chatr-Aryamontri A, Dowell KG, Huala E, Lourenço A, Nash R, Veuthey AL, Wiegers T, Winter AG.
    Text mining for the biocuration workflow.
    Database (Oxford). 2012 Apr 18;2012:bas020. Print 2012. [PMID:22513129]
  2. Bello SM, Richardson JE, Davis AP, Wiegers TC, Mattingly CJ, Dolan ME, Smith CL, Blake JA, Eppig JT.
    Disease model curation improvements at Mouse Genome Informatics.
    Database (Oxford). 2012 Mar 20;2012:bar063. Print 2012. [PMID:22434831]
  3. Davis AP, Wiegers TC, Rosenstein MC, Mattingly CJ.
    MEDIC: a practical disease vocabulary used at the Comparative Toxicogenomics Database.
    Database (Oxford). 2012 Mar 20;2012:bar065. Print 2012. [PMID:22434833]
  4. Mattingly CJ, McKone TE, Callahan MA, Blake JA, Cohen Hubal EA.
    Providing the Missing Link: the Exposure Science Ontology ExO.
    Environ Sci Technol. 2012 Mar 20;46(6):3046-53. Epub 2012 Mar 12. [PMID:22324457]
  5. Davis AP, Rosenstein MC, Wiegers TC, Mattingly CJ.
    DiseaseComps: a metric that discovers similar diseases based upon common toxicogenomic profiles at CTD.
    Bioinformation. 2011 Oct 14;7(4):154-6. [PMID:22125387]
  6. Davis AP, Wiegers TC, Rosenstein MC, Murphy CG, Mattingly CJ.
    The curation paradigm and application tool used for manual curation of the scientific literature at the Comparative Toxicogenomics Database.
    Database (Oxford). 2011 Sep 20;2011:bar034. Print 2011. [PMID:21933848]
  7. Mattingly CJ.
    Understanding environment-disease connections: An introduction to the Comparative Toxicogenomics Database (CTD).
    NCI-Nature Pathway Interaction Database. doi:10.1038/pid.2011.2 (2011).
  8. Davis AP, King BL, Mockus S, Murphy CG, Saraceni-Richards C, Rosenstein M, Wiegers T, Mattingly CJ.
    The Comparative Toxicogenomics Database: update 2011.
    Nucleic Acids Res. 2011 Jan;39(Database issue):D1067-72. [PMID:20864448]
  9. Davis AP, Murphy CG, Saraceni-Richards CA, Rosenstein MC, Wiegers TC, Hampton TH, Mattingly CJ.
    GeneComps and ChemComps: a new CTD metric to identify genes and chemicals with shared toxicogenomic profiles.
    Bioinformation. 2009 Oct 15;4(4):173-4. [PMID:20198196]
  10. Wiegers TC, Davis AP, Cohen KB, Hirschman L, Mattingly CJ.
    Text mining and manual curation of chemical-gene-disease networks for the Comparative Toxicogenomics Database (CTD).
    BMC Bioinformatics. 2009 Oct 8;10(1):326. [PMID:19814812]
  11. Mattingly CJ, Hampton T, Brothers K, Griffin NE, Planchart AJ.
    Perturbation of defense pathways by low-dose arsenic exposure in zebrafish embryos.
    Environ Health Perspect. 2009 Jun;117(6):981-7. [PMID:19590694]
  12. Gohlke JM, Thomas R, Zhang Y, Rosenstein MC, Davis AP, Murphy C, Becker KG, Mattingly CJ, Portier CJ.
    Genetic and environmental pathways to complex diseases.
    BMC Syst Biol. 2009 May 5;3(1):46. [PMID:19416532]
  13. Mattingly CJ.
    Chemical databases for environmental health and clinical research.
    Toxicol Lett. 2009 Apr 10;186(1):62-5. [PMID:18996453]
  14. Davis AP, Murphy CG, Saraceni-Richards CA, Rosenstein MC, Wiegers TC, Mattingly CJ.
    Comparative Toxicogenomics Database: a knowledgebase and discovery tool for chemical-gene-disease networks.
    Nucleic Acids Res. 2009 Jan;37(Database issue):D786-92. [PMID:18782832]
  15. Davis AP, Murphy CG, Rosenstein MC, Wiegers TC, Mattingly CJ.
    The Comparative Toxicogenomics Database facilitates identification and understanding of chemical-gene-disease associations: arsenic as a case study.
    BMC Med Genomics. 2008 Oct 9;1(1):48. [PMID:18845002]
  16. Mattingly CJ, Colby GT, Rosenstein MC, Forrest JN, Boyer JL.
    The Comparative Toxicogenomics Database (CTD): a resource for comparative toxicological studies.
    J Exp Zoolog A Comp Exp Biol. 2006 Sep 1;305(9):689-92. [PMID:16902965]
  17. Mattingly CJ, Rosenstein MC, Davis AP, Colby GT, Forrest JN, Boyer JL.
    The Comparative Toxicogenomics Database: a cross-species resource for building chemical-gene interaction networks.
    Toxicol Sci. 2006 Aug;92(2):587-95. [PMID:16675512]
  18. Mattingly CJ, Colby GT, Rosenstein MC, Forrest JN, Boyer JL.
    Promoting comparative molecular studies in environmental health research: an overview of the comparative toxicogenomics database (CTD).
    Pharmacogenomics J. 2004;4(1):5-8. [PMID:14735110]
  19. Mattingly CJ, Colby GT, Forrest JN, Boyer JL.
    The Comparative Toxicogenomics Database (CTD).
    Environ Health Perspect. 2003 May;111(6):793-5. [PMID:12760826]

Top Presentations, Posters, Etc.

  1. Wiegers TC, Davis AP, Mattingly CJ.
    Collaborative Biocuration-Text Mining Development Task for Document Prioritization for Curation.
    BioCreative Workshop 2012. Georgetown University, Washington, DC, USA. Apr 4-5, 2012.
  2. Bello SM, Davis AP, Wiegers TC, Dolan ME, Smith C, Richardson J, Blake J, Eppig JT, Mattingly CJ.
    Waiting for a robust Disease Ontology: a merger of OMIM and MeSH as a practical interim solution.
    International Conference on Biomedical Ontology, University at Buffalo, NY, USA. Jul 26-30, 2011.
  3. Rosenstein MC, Wiegers TC, McMorran RA.
    Oracle to PostgreSQL: CTD's Path to Database Happiness.
    Mouse Genome Informatics Group Meeting. The Jackson Laboratory. Bar Harbor, ME, USA. Jun 8, 2011.
  4. Davis AP, Murphy CG, Saraceni-Richards CA, Mockus S, Rosenstein MC, Wiegers TC, King B, Mattingly CJ.
    Environmental chemicals and human health: uncovering the connections with CTD.
    Society of Toxicology Annual Meeting. Washington, DC, USA. Mar 7-10, 2011.
  5. Davis AP, Murphy CG, Mattingly CJ.
    The Comparative Toxicogenomics Database.
    Society of Toxicology Annual Meeting. Washington, DC, USA. Mar 7-10, 2011.
  6. Davis AP.
    Using CTD to understand BPA.
    NIEHS BPA Grantee Research Update and Coordination Meeting. Research Triangle Park, NC, USA. Sep 21-22, 2010.
  7. Davis AP.
    New features at CTD.
    The OpenHelix Blog. May 18, 2010.
  8. Murphy CG.
    Use and development of ontologies in the Comparative Toxicogenomics Database (CTD).
    Protein Ontology 3rd Annual Meeting. University of Delaware, Newark, DE, USA. Apr 26-27, 2010.
  9. Davis AP, Murphy CG, Saraceni-Richards CA, Rosenstein MC, Wiegers TC, Mattingly CJ.
    CTD: exploring over 1,000,000 chemical-gene-disease interactions.
    Society of Toxicology Annual Meeting. Salt Lake City, UT, USA. Mar 7-11, 2010.
  10. Davis AP.
    Mapping OMIM to MeSH: a disease hierarchy for CTD.
    Mouse Genome Informatics Group Meeting. The Jackson Laboratory. Bar Harbor, ME, USA. Feb 23, 2010.
  11. Wiegers TC, Murphy C, Saraceni-Richards CA, Rosenstein MC, Davis AP, Mattingly CJ.
    The Comparative Toxicogenomics Database (CTD) Text Mining Study.
    3rd International Biocuration Conference. Berlin, Germany. Apr 2009.
  12. Mattingly CJ, Murphy C, Saraceni-Richards CA, Rosenstein MC, Wiegers TC, Davis AP.
    The Comparative Toxicogenomics Database (CTD): A discovery tool for identifying chemical-gene-disease networks.
    Society of Toxicology Annual Meeting. Baltimore, MD, USA. Mar 2009.
  13. Mattingly CJ, Murphy C, Saraceni-Richards CA, Rosenstein MC, Wiegers TC, Davis AP.
    Using the Comparative Toxicogenomics Database (CTD) to identify chemical-gene-disease associations.
    Society of Experimental Toxicology and Chemistry. Tampa, FL, USA. Nov 2008.
  14. Mattingly CJ.
    The Comparative Toxicogenomics Database.
    Annual environmental health sciences core centers meeting. Philadelphia, PA, USA. Oct 2008.
  15. Davis AP, Murphy CG, Rosenstein MC, Wiegers TC, Boyer JL, Mattingly CJ.
    Using CTD to discover chemical-gene-disease associations: arsenic as a case study.
    Mechanisms of Toxicity, Gordon Research Conference, Bates College, Lewiston, ME, USA. Jul 27-Aug 1, 2008.
  16. Mattingly CJ.
    Using the Comparative Toxicogenomics Database (CTD) to Explore Chemical-Gene-Disease Connections.
    University of Maine Graduate School of Biomedical Sciences Symposium. Orono, ME, USA. May 2008.
  17. Mattingly CJ.
    The Comparative Toxicogenomics Database (CTD): Promoting understanding of chemical-gene-disease associations.
    NERC International Collaboration Initiative: Bioinformatics Workshop. Birmingham, UK. Mar 2008.
  18. Mattingly CJ, Davis AP, Rosenstein MC, Wiegers T, Forrest JN, Boyer JL.
    Using the Comparative Toxicogenomics Database to identify chemical-gene-disease associations: arsenic as a case study.
    Society of Toxicology Annual Meeting. Seattle, WA, USA. Mar 2008.
  19. Davis AP, Murphy C, Rosenstein MC, Wiegers T, Forrest JN, Boyer JL, Mattingly CJ.
    Curating the Comparative Toxicogenomics Database: a knowledge and discovery environment for chemical-gene-disease associations. [Abstract]
    Second International Biocuration Meeting. San Jose, CA, USA. Oct 2007.
  20. Mattingly CJ.
    The Comparative Toxicogenomics Database: Promoting Understanding About the Mechanisms of Chemical Actions. Toxicology Division of the American Society for Pharmacology and Experimental Therapeutics (ASPET).
    "Toxicogenomics Approaches for Evaluating Drug and Chemical Toxicity" Symposium at the Experimental Biology Annual Meeting. Washington, DC, USA. Apr 2007.
  21. Davis AP, Mattingly CJ, Rosenstein MC, Wiegers T, Forrest JN, Boyer JL.
    The Comparative Toxicogenomics Database: connecting chemicals, genes, and diseases. [Abstract]
    Society of Toxicology Annual Meeting. Charlotte, NC, USA. Mar 2007.
  22. Mattingly CJ, Rosenstein MC, Davis AP, Colby GC, Forrest JN, Boyer JL.
    Comparative Toxicogenomics Database (CTD): Promoting Understanding of Chemical-Gene Interactions.
    Keystone: the Molecular and Integrative Basis for Toxic Responses. Victoria, BC. May 2006.
  23. Davis AP, Mattingly CJ, Rosenstein MC, Forrest JN, Boyer JL.
    The Comparative Toxicogenomics Database: A Public Resource for Chemical-Gene and Chemical-Protein Interactions.
    EPA Science Forum 2006, U.S Environmental Protection Agency, Washington, DC, USA. May 2006.
  24. Mattingly CJ, Rosenstein MC, Davis AP, Forrest JN, Boyer JL.
    The Comparative Toxicogenomics Database (CTD).
    Society of Toxicology Annual Meeting. San Diego, CA, USA. Mar 2006.
  25. Colby GT, Mattingly CJ, Rosenstein, MC, Forrest JN, Boyer JL.
    Data Integration in the Comparative Toxicogenomics Database (CTD).
    Annual meeting of the International Society for Computational Biology. Detroit, MI, USA. Jun 2005.
  26. Mattingly CJ.
    Cross-Species Comparative Approaches to Understanding Chemical-Gene Interactions.
    15th International Conference of Comparative Endocrinology. Boston, MA, USA. May 2005.
  27. Mattingly CJ.
    Comparative Approaches to Understanding Gene-Chemical Interactions.
    Northland Chapter of the Society of Toxicology Meeting. Minneapolis, MN, USA. Apr 2005.
  28. Mattingly CJ, Colby GT, Rosenstein MC, Forrest JN, Boyer JL.
    The Comparative Toxicogenomics Database (CTD).
    Society of Toxicology Annual Meeting. New Orleans, LA, USA. Mar 2005.
  29. Mattingly CJ.
    The Comparative Toxicogenomics Database (CTD): Comparative Molecular Approaches to Environmental Health Research.
    American Chemical Society National Meeting. Philadelphia, PA, USA. Aug 2004.
  30. Mattingly CJ.
    Comparative Approaches to Understanding Mechanisms of Toxicity: CTD.
    2004 World Congress on In Vitro Biology. San Francisco, CA, USA. May 2004.
  31. Mattingly CJ, Colby GT, Rosenstein MC, Forrest JN, Boyer JL.
    The Comparative Toxicogenomics Database (CTD).
    Society of Toxicology Annual Meeting. Salt Lake City, UT, USA. Mar 2004.